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Insight into the halogen bonding between PA-1 ligand and pyruvate dehydrogenase complex E1 component by crystal structure, DFT calculation, and molecular docking

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成果类型:
期刊论文
作者:
He, Junbo*;He, Haifeng;Cai, Meng;Zhao, Feng*;He, Hongwu
通讯作者:
He, Junbo;Zhao, Feng
作者机构:
[He, Junbo] Wuhan Polytech Univ, Coll Food Sci & Engn, Key Lab Deep Proc Major Grain & Oil, Minist Educ, Wuhan 430023, Hubei, Peoples R China.
[He, Haifeng; Zhao, Feng] Jiangxi Sci & Technol Normal Univ, Jiangxi Key Lab Organ Chem, Fenglin St, Nanchang 330013, Jiangxi, Peoples R China.
[He, Hongwu; Cai, Meng] Cent China Normal Univ, Dept Chem, Key Lab Pesticide & Chem Biol, Minist Educ, Wuhan 430079, Hubei, Peoples R China.
通讯机构:
[He, Junbo] W
[Zhao, Feng] J
Wuhan Polytech Univ, Coll Food Sci & Engn, Key Lab Deep Proc Major Grain & Oil, Minist Educ, Wuhan 430023, Hubei, Peoples R China.
Jiangxi Sci & Technol Normal Univ, Jiangxi Key Lab Organ Chem, Fenglin St, Nanchang 330013, Jiangxi, Peoples R China.
语种:
英文
关键词:
5-lodo-1,2,3-triazole;Halogen bonding;PDHc-E1 inhibitor;DFT calculation;Molecular docking
期刊:
Journal of Molecular Structure
ISSN:
0022-2860
年:
2020
卷:
1199
页码:
126991
基金类别:
National Natural Science Foundation of ChinaNational Natural Science Foundation of China [21807084, 21867011]
机构署名:
本校为第一且通讯机构
院系归属:
食品科学与工程学院
摘要:
The binding mode of 5-((4-((4-chlorophenoxy)methyl)-5-iodo-1H-1,2,3-triazol-1-yl)methyl)-2-methylpyrimidin-4-amine (PA-1) was studied using a combination of X-ray crystallography, DFT calculation, and molecular docking approaches. The crystal structure of PA-1 primarily indicated the formation of intermolecular hydrogen bonding and halogen bonding between N-H center dot center dot center dot N and C-I center dot center dot center dot N. DFT calculation demonstrated that the geometric structure of PA-1 is in excellent agreement with the crystal structure. The frontier molecular orbital analysis...

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