Genus-Wide Pan-Genome Analysis of Oryza Calcium-Dependent Protein Kinase Genes and Their Related Kinases Highlights the Complexity of Protein Domain Architectures and Expression Dynamics

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成果类型：

期刊论文

作者：

Shi, Fu;Li, Li;Chen, Mingjie;Chang, Junli;Tu, Min;...

通讯作者：

Min Tu<&wdkj&>Guangyuan He<&wdkj&>Yin Li<&wdkj&>Guangxiao Yang

作者机构：

[Chen, Mingjie; Chang, Junli] The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, The Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science & Technology, Wuhan 430074, China

These authors contributed equally to this work.

Authors to whom correspondence should be addressed.

Hubei Province Key Laboratory of Agricultural Waste Resource Utilization, Hubei Technical Engineering Research Center for Chemical Utilization and Engineering Development of Agricultural and Byproduct Resources, School of Chemical and Environmental Engineering, Wuhan Polytechnic University, Wuhan 430023, China

[Shi, Fu; Li, Li] The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, The Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science & Technology, Wuhan 430074, China<&wdkj&>These authors contributed equally to this work.

通讯机构：

[Min Tu] A

[Guangyuan He; Yin Li; Guangxiao Yang] T

The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, The Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science & Technology, Wuhan 430074, China<&wdkj&>Authors to whom correspondence should be addressed.<&wdkj&>Authors to whom correspondence should be addressed.<&wdkj&>Hubei Province Key Laboratory of Agricultural Waste Resource Utilization, Hubei Technical Engineering Research Center for Chemical Utilization and Engineering Development of Agricultural and Byproduct Resources, School of Chemical and Environmental Engineering, Wuhan Polytechnic University, Wuhan 430023, China

语种：

英文

关键词：

calcium-dependent protein kinases;CPKs and their related kinases;Oryza;duplicated gene;EF-hand motifs;transcriptome analysis

期刊：

Plants-Basel

ISSN：

2223-7747

年：

2025

卷：

期：

页码：

1542-

DOI：

10.3390/plants14101542

基金类别：

Conceptualization, project administration, resources, supervision, funding acquisition, M.T., G.H., Y.L. and G.Y.; methodology, investigation, writing—original draft preparation, F.S. and L.L.; Data analysis, F.S., L.L., M.T. and Y.L.; writing, review and editing, M.C., J.C., M.T., G.H., Y.L. and G.Y. All authors have read and agreed to the published version of the manuscript. This research was funded by the National Natural Science Foundation of China (31570261), the National Natural Science Foundation of Hubei China (2016CFB549), the Research Support Programs for the HUST Research Facilities and Bases (5001170128), the International Science and Technology Collaboration Project of Hubei Province (2024EHA056) and the Fundamental Research Funds for Central Universities, HUST to Yin Li (2021XXJS070 and 3004170157). The research was also supported by the Natural Science Foundation of Hubei Province of China (2024AFB955), the Start-Up Research Funding of Wuhan Polytechnic University (2021RZ100, 53210052172).

机构署名：

本校为通讯机构

院系归属：

化学与环境工程学院

摘要：

The Oryza genus serves not only as a gene pool for rice improvement but also as a model system for plant evolutionary research. Calcium-dependent protein kinases (CPKs) function as both effectors and sensors in calcium signaling and play versatile roles in plant development and stress responses. Four kinase families, namely CPK-related kinases (CRKs), phosphoenolpyruvate carboxylase kinases (PPCKs), PPCK-related kinases (PEPRKs), and calcium- and calmodulin-dependent kinases (CCaMKs), are frequently called CPK-related kinases. This study utilized evolutionary genomics approaches and provided t...

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Genus-Wide Pan-Genome Analysis of Oryza Calcium-Dependent Protein Kinase Genes and Their Related Kinases Highlights the Complexity of Protein Domain Architectures and Expression Dynamics

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