Genome-wide identification and characterization of genes encoding cyclohexylamine degradation in a novel cyclohexylamine-degrading bacterial strain of Pseudomonas plecoglossicida NyZ12

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成果类型：

期刊论文

作者：

Yan, Da-Zhong*;Li, Xin;Li, Cun-Zhi;Mao, Ling-Qi;Chi, Xiang-Qun;...

通讯作者：

Yan, Da-Zhong

作者机构：

[Li, Cun-Zhi; Mao, Ling-Qi; Yan, Da-Zhong; Li, Xin] Wuhan Polytech Univ, Sch Biol & Pharmaceut Engn, Wuhan 430023, Peoples R China.

[Chi, Xiang-Qun; Zhou, Ning-Yi] Chinese Acad Sci, Wuhan Inst Virol, Wuhan 430071, Peoples R China.

[Zhou, Ning-Yi] Shanghai Jiao Tong Univ, State Key Lab Microbial Metab, Shanghai 200240, Peoples R China.

[Zhou, Ning-Yi] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Shanghai 200240, Peoples R China.

[Liu, Dong-Yan] Shanghai Normal Univ, Coll Life & Environm Sci, Shanghai 200234, Peoples R China.

通讯机构：

[Yan, Da-Zhong] W

Wuhan Polytech Univ, Sch Biol & Pharmaceut Engn, Wuhan 430023, Peoples R China.

语种：

英文

关键词：

Bacteria;Carbon;Encoding (symbols);Genes;Metabolism;Polymerase chain reaction;RNA;Signal encoding;Transcription;Bioinformatics analysis;Catabolism;Cyclohexanone monooxygenase;Cyclohexanones;Cyclohexylamine;Gram-negative bacteria;Pseudomonas plecoglossicida;Reverse transcription PCR;Biodegradation;adipic acid;amine oxidase (flavin containing);cyclohexane;cyclohexanol;cyclohexanone;cyclohexylamine;cyclohexylamine oxidase;oxidoreductase;plasmid DNA;unclassified drug;cyclohexylamine derivative;Article;bacterial gene;bacterial genome;bacterium culture;carbon source;chaA gene;controlled study;gene cluster;gene identification;genome analysis;microbial degradation;nonhuman;nucleotide sequence;operon;priority journal;Pseudomonas;Pseudomonas plecoglossicida NyZ12;reverse transcription polymerase chain reaction;bacterial gene;bioremediation;genetics;metabolism;Pseudomonas;Biodegradation, Environmental;Cyclohexylamines;Genes, Bacterial;Genome, Bacterial;Oxidoreductases;Pseudomonas

期刊：

Journal of Biotechnology

ISSN：

0168-1656

年：

2017

卷：

251

页码：

166-173

DOI：

10.1016/j.jbiotec.2017.04.036

基金类别：

This work was financially supported by the National Natural Science Foundation of China (31270112) and State Key Laboratory of Microbial Metabolism (Shanghai Jiao Tong University) (MMLKF14-06), respectively. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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院系归属：

生命科学与技术学院

摘要：

The Gram-negative strain of Pseudomonas plecoglossicida NyZ12 isolated from soil has the ability to degrade cyclohexylamine (CHAM). The genes encoding CHAM degradation by gram-negative bacteria, however, have not been reported previously. In this study, ORFs predicted to encode CHAM degradation by NyZ12 were identified by bioinformatics analysis. Differential expression of the proposed ORFs was analyzed via RNA-seq and quantitative reverse transcription-PCR (qRT-PCR), using RNA extracted from NyZ12 cultured with or without CHAM addition. One CH...

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Genome-wide identification and characterization of genes encoding cyclohexylamine degradation in a novel cyclohexylamine-degrading bacterial strain of Pseudomonas plecoglossicida NyZ12

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